V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 197 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 197 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 197 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 197 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 197
in 'msaprobs'
muscle

The residue for every species at site 197 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 LSVVGAAWGI Y ITGSSIIGGG Site 154
O_mordax_3 FSALGAAYGT A KSGTGIAAMS Site 154
D_rerio_3 FSALGAAYGT A KSGTDIAAMS Site 154
M_grisea_16 LSVVGAAWGI F ITGSSILGGG Site 154
M_grisea_11 FGCAGAAFGT A KSGIGIAGVG Site 154
A_niger_3 FTCFGAAYGT A KAGVGVCGMA Site 154
C_glabrata_3 FTSLGAAYGT A KSGVGVCVTC Site 154
A_terreus_11 TPAMGAAYGT A KSGIGISGVG Site 154
A_terreus_16 FSVVGAGWGI F LTGSSIVAGG Site 154
C_parvum_16 LSTFGAGWGI F TTGNSLVGAA Site 154
T_adhaerens_3 FSALGAAYGT A KSGTGIAAMS Site 154
T_castaneum_3 FSSLGAAYGT A KSGTGIAAMS Site 154
X_tropicalis_3 FSALGAAYGT A KSGTGIAAMS Site 154
G_zeae_3 FTCLGASYGT A KSGVGIAAMG Site 154
L_elongisporus_3 FTCFGASYGT A KSGVGICATS Site 154
A_fumigatus_3 FTCFGAAYGT A KAGVGVCGMA Site 154
M_grisea_3 FTCLGASYGT A KSGVGIAAMG Site 154
S_pombe_3 FASFGAAYGT A KAGVGISAMG Site 154
C_albicans_3 LSCAGAAIGT A KSGIGIAGIG Site 154
B_bovis_16 LAVLGAGWGI L LCGTSIMGGS Site 154
C_muris_3 FANLGAAYGT A RAGVGISSMG Site 154
S_purpuratus_3 FSALGAAYGT A KSGTGVAAMS Site 154
C_immitis_16 LSVVGAAWGI F ITGSSIIGGG Site 154
M_mulatta_16 LSVVGAAWGI Y ITGSSIIGGG Site 154
Y_lipolytica_3 FTCFGASYGT A KSGVGICATS Site 154
Species Residue at Site 197
in 'msaprobs'
muscle

The residue for every species at site 197 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 NKTHKVCRGI L ITGSSILGGG Site 154
C_immitis_11 NTALGAAYGT A KAGIGIANVG Site 154
A_mellifera_16 LSVVGAALGI H TTGVSIIGGG Site 154
A_gossypii_11 LSSLGAAIGT A KSGIGISGIG Site 154
T_annulata_16 LSVFGAATGL M LCGPSIMGGS Site 154
N_vectensis_3 FSALGAAYGT A KSGTGIAAMS Site 154
S_Salar_16 LSVVGAAWGI Y ITGSSIIGGG Site 154
L_elongisporus_16 FSVVGAAWGI F ITGTSIIGAG Site 154
C_neoformans_16 LSVSGAAWGI F VTGASILGGG Site 154
C_neoformans_11 FSTVGAAYGT S KAGIGIAGLG Site 154
P_knowlesi_16 LSIIGAAWGI F VCGTSIVGAS Site 154
A_terreus_3 FTCFGAAYGT A KAGVGVCSMA Site 154
A_pisum_3 FSALGAAYGT A KSGTGIAAMS Site 154
S_Salar_3 FSALGAAYGT A KSGTGIAAMS Site 154
P_marneffei_3 FTCFGAAYGT A KAGVGVCGMA Site 154
P_stipitis_3 FTCFGASYGT A KSGVGICATC Site 154
A_fumigatus_11 LRSMGAAYGT A KSGIGISGVG Site 154
A_gossypii_3 FTSFGAAYGT A KSGVSICATC Site 154
C_hominis_3 LSNFGAAYGT A KAGLAIASCG Site 154
C_muris_16 LSGLGAGWGI F TTGSSLVGAS Site 154
X_laevis_16 LSVVGAAWGI Y ITGSSILGGG Site 154
M_mulatta_3 CSAPRAAYGT V KSRAGIAAMS Site 154
M_brevicollis_16 ISVVGAAWGI F ITGASILGGG Site 154
K_lactis_3 FTSFGAAYGT A KSGVGICATC Site 154
T_castaneum_16 LSVVGAAAGI H TTGVSIIGGG Site 154
Species Residue at Site 197
in 'msaprobs'
muscle

The residue for every species at site 197 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 FSVVGAAWGI F TTGSSIMGAG Site 154
E_caballus_3 FSALGAAYGT A KSGTGIAAMS Site 154
C_globosum_3 FTCLGASYGT A KSGVGIAAMG Site 154
A_clavatus_3 FTCFGAAYGT A KAGVGVCGMA Site 154
N_crassa_11 FGSAGAAYGT A KSGIGIAGVG Site 154
N_crassa_16 LSVVGAAWGI F ITGSSILGGG Site 154
X_tropicalis_16 LSVVGAAWGI Y ITGSSILGGG Site 154
P_anserina_11 FGSMGAAYGT A KAGIGIAGVG Site 154
P_vivax_16 LSIIGAAWGI F ICGTSIVGAS Site 154
P_anserina_16 LSVVGAAWGI F ITGSSILGGG Site 154
H_sapiens_16 LSVVGAAWGI Y ITGSSIIGGG Site 154
T_annulata_3 FSNLGAAYGT A RSGVGISSMG Site 154
C_intestinalis_3 FSAIGAAYGT A KSGTGIAAMS Site 154
L_elongisporus_11 LSCAGAAIGT A KSGIGIAGIG Site 154
A_gossypii_16 LSVVGAAWGI F ITGASIIGAG Site 154
A_pisum_16 LSVVGAALGI H TTGVSIVGGG Site 154
N_crassa_3 FTCLGASYGT A KSGVGIAAMG Site 154
V_polyspora_3 FTSLGAAYGT A KSGVGICATC Site 154
S_cerevisiae_3 FTSLGAAYGT A KSGVGICATC Site 154
P_marneffei_16 LSVVGAAWGI F LTGSSILGGG Site 154
D_hansenii_3 FTCFGASYGT A KSGVGICATC Site 154
S_pombe_11 FSCLGAGYGT A LAGRGIAAVG Site 154
T_guttata_3 FSALGAAYGT A KSGTGIAAMS Site 154
S_pombe_16 FGIIGAAWGI F ICGTSILGGA Site 154
B_fuckeliana_3 FTCFGAAYGT A KSGVGICAMG Site 154
Species Residue at Site 197
in 'msaprobs'
muscle

The residue for every species at site 197 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 LSVVGAAWGI F ATGSSIVGGG Site 154
S_cerevisiae_16 LSVVGAAWGI F ITGSSMIGAG Site 154
R_norvegicus_3 FSAMGAAYGT A KSGTGIAAMS Site 154
S_cerevisiae_11 LSCLGAAIGT A KSGIGIAGIG Site 154
B_taurus_3 FSALGAAYGT A KSGTGIAAMS Site 154
C_familiaris_3 FSALGAAYGT A KSGTGIAAMS Site 154
P_anserina_3 FTCLGASYGT A KSGVGIAAMG Site 154
P_marneffei_11 FGSIGAAYGT A KSGIGIAGVG Site 154
P_knowlesi_3 FSNLGAAYGT A KSGVGVCSVG Site 154
T_guttata_16 LSVVGAAWGI Y ITGSTIIAGG Site 154
B_fuckeliana_11 FGCIGAAYGT A KSGIGIAGVG Site 154
C_cinerea_okayama_3 FTCIGASYGT A KSGVGISAMS Site 154
P_falciparum_16 LSIMGAAWGI F ICGTSIVGAS Site 154
N_vectensis_16 LSVVGAAWGI L LTGASICGGG Site 154
A_niger_11 FGSMGAAYGT A KSGIGISGVG Site 154
A_niger_16 LSVVGAAWGI F LTGSSIVGGG Site 154
C_parvum_3 FANLGAAYGI A KSGVGISSMA Site 154
S_purpuratus_16 LSVVGAAWGI F TTGTSIVGGG Site 154
B_floridae_3 FSAFGAAYGT A KSGMGIAAMS Site 154
Y_lipolytica_16 LSVIGAAWGI F ITGSTIIGAG Site 154
A_mellifera_3 FSALGAAYGT A KSGTGIAAMS Site 154
A_clavatus_16 LSVVGAGWGI F LTGSSIVGGG Site 154
A_clavatus_11 FGSLGAAYGT A KSGIGISGVG Site 154
S_sclerotiorum_3 FTCFGAAYGT A KSGVGICAMG Site 154
P_falciparum_3 FSNLGAAFGT A KSGVGVCSVG Site 154
Species Residue at Site 197
in 'msaprobs'
muscle

The residue for every species at site 197 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 LSVVGSAWGI W VTASSLMGAA Site 154
C_cinerea_okayama_11 FSTVGAAFGT S KAGIGIAGLG Site 154
D_hansenii_16 FSVVGAAWGI F ITGSSIIGAG Site 154
D_hansenii_11 LSCAGAAIGT A KSGIGISGIG Site 154
C_cinerea_okayama_16 LSVAGA---- - ----------  
P_vivax_3 FSNLGAAYGT A KSGVGVCSVG Site 154
C_immitis_3 FTCFGAAYGT A KAGVGVCSTA Site 154
G_zeae_11 FGCIGAAYGT A KSGIGIAGVG Site 154
C_neoformans_3 FTCIGAAYGT A KSGVGISAMA Site 154
H_sapiens_3 FSALGAAYGT A KSGTGIAAMS Site 154
G_zeae_16 LSVVGAAWGI F ITGSSILGGG Site 154
Y_lipolytica_11 LSSAGAAIGT A KSGIGIAGIG Site 154
M_brevicollis_3 FSALGAAYGT A KSGTGIAAMS Site 154
D_discoideum_3 FTVMGAAYGT A KASVGISNMG Site 154
P_stipitis_16 FSVVGAAWGI F ITGSTILGAG Site 154
C_albicans_16 FSVVGAAWGI F ITGTSILGAG Site 154
C_albicans_11 LSCAGAAIGT A KSGIGIAGIG Site 154
P_stipitis_11 LSCAGAAIGT A KSGVGIAGIG Site 154
X_laevis_3 FSALGAAYGT A KSGTGIAAMS Site 154
C_glabrata_11 LSCLGAAIGT A KSGIGIAGIG Site 154
E_caballus_16 LSVVGAAWGI Y ITGSSIIGGG Site 154
C_glabrata_16 LSVVGAAWGI F ITGSSMIGAG Site 154
V_polyspora_11 LSCLGAAIGT A KSGIGIAGIG Site 154
V_polyspora_16 LSVIGAAWGI F ITGSSIIGAG Site 154
C_hominis_16 LSTFGAGWGI F TTGNSLVGAA Site 154
Species Residue at Site 197
in 'msaprobs'
muscle

The residue for every species at site 197 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 FGCAGAAYGT A KSGIGIAGVG Site 154
C_globosum_16 LSVVGAAWGI F ITGSSILGGG Site 154
O_mordax_16 LSVVGAAWGI Y ITGSSIIGGG Site 154
D_rerio_16 LSVVGAAWGI Y ITGSSIIGGG Site 154
B_bovis_3 FSSLGAAYGT A RSGVGISSMG Site 154
B_floridae_16 LSVVGAAWGI L TTGSSIIGGG Site 154
M_musculus_3 FSAMGAAYGT A KSGTGIAAMS Site 154
A_fumigatus_16 LSVVGAAWGI F LTGSSIVGGG Site 154
C_familiaris_16 LSVVGAAWGI Y ITGSSIIGGG Site 154
K_lactis_11 LSCLGAAIGT A KSGIGISGIG Site 154
K_lactis_16 LSVVGAAWGI F ITGSSIIGAG Site 154
B_taurus_16 LSVVGAAWGI Y ITGSSIIGGG Site 154
S_sclerotiorum_16 LSVVGAAWGI L ITGSSILGGG Site 154
S_sclerotiorum_11 LQGIGAAYGT A KSGIGIAGVG Site 154
R_norvegicus_16 LSVVGAAWGI Y ITGSSIIGGG Site 154

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