V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 192 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 192 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 192 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 192 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 192
in 'msaprobs'
muscle

The residue for every species at site 192 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 ---ISLSVVG A AWGIYITGSS Site 149
O_mordax_3 ---MVFSALG A AYGTAKSGTG Site 149
D_rerio_3 ---MVFSALG A AYGTAKSGTD Site 149
M_grisea_16 ---IGLSVVG A AWGIFITGSS Site 149
M_grisea_11 ---MIFGCAG A AFGTAKSGIG Site 149
A_niger_3 ---IVFTCFG A AYGTAKAGVG Site 149
C_glabrata_3 ---IIFTSLG A AYGTAKSGVG Site 149
A_terreus_11 RKLTTTPAMG A AYGTAKSGIG Site 149
A_terreus_16 ---IGFSVVG A GWGIFLTGSS Site 149
C_parvum_16 ---IVLSTFG A GWGIFTTGNS Site 149
T_adhaerens_3 ---MVFSALG A AYGTAKSGTG Site 149
T_castaneum_3 ---IIFSSLG A AYGTAKSGTG Site 149
X_tropicalis_3 ---MVFSALG A AYGTAKSGTG Site 149
G_zeae_3 ---IVFTCLG A SYGTAKSGVG Site 149
L_elongisporus_3 ---IVFTCFG A SYGTAKSGVG Site 149
A_fumigatus_3 ---IVFTCFG A AYGTAKAGVG Site 149
M_grisea_3 ---IVFTCLG A SYGTAKSGVG Site 149
S_pombe_3 ---IVFASFG A AYGTAKAGVG Site 149
C_albicans_3 ---MILSCAG A AIGTAKSGIG Site 149
B_bovis_16 ---LGLAVLG A GWGILLCGTS Site 149
C_muris_3 ---VVFANLG A AYGTARAGVG Site 149
S_purpuratus_3 ---MVFSALG A AYGTAKSGTG Site 149
C_immitis_16 ---VGLSVVG A AWGIFITGSS Site 149
M_mulatta_16 ---ISLSVVG A AWGIYITGSS Site 149
Y_lipolytica_3 ---IVFTCFG A SYGTAKSGVG Site 149
Species Residue at Site 192
in 'msaprobs'
muscle

The residue for every species at site 192 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 -----NKTHK V CRGILITGSS Site 149
C_immitis_11 ---YDNTALG A AYGTAKAGIG Site 149
A_mellifera_16 ---VALSVVG A ALGIHTTGVS Site 149
A_gossypii_11 ---MILSSLG A AIGTAKSGIG Site 149
T_annulata_16 ---LGLSVFG A ATGLMLCGPS Site 149
N_vectensis_3 ---MVFSALG A AYGTAKSGTG Site 149
S_Salar_16 ---ISLSVVG A AWGIYITGSS Site 149
L_elongisporus_16 ---IGFSVVG A AWGIFITGTS Site 149
C_neoformans_16 ---IGLSVSG A AWGIFVTGAS Site 149
C_neoformans_11 ---IVFSTVG A AYGTSKAGIG Site 149
P_knowlesi_16 ---LFLSIIG A AWGIFVCGTS Site 149
A_terreus_3 ---IVFTCFG A AYGTAKAGVG Site 149
A_pisum_3 ---IIFSALG A AYGTAKSGTG Site 149
S_Salar_3 ---MVFSALG A AYGTAKSGTG Site 149
P_marneffei_3 ---IVFTCFG A AYGTAKAGVG Site 149
P_stipitis_3 ---IVFTCFG A SYGTAKSGVG Site 149
A_fumigatus_11 ---LPLRSMG A AYGTAKSGIG Site 149
A_gossypii_3 ---IVFTSFG A AYGTAKSGVS Site 149
C_hominis_3 ---TALSNFG A AYGTAKAGLA Site 149
C_muris_16 ---LILSGLG A GWGIFTTGSS Site 149
X_laevis_16 ---ISLSVVG A AWGIYITGSS Site 149
M_mulatta_3 ---MVCSAPR A AYGTVKSRAG Site 149
M_brevicollis_16 ---ISISVVG A AWGIFITGAS Site 149
K_lactis_3 ---IIFTSFG A AYGTAKSGVG Site 149
T_castaneum_16 ---VALSVVG A AAGIHTTGVS Site 149
Species Residue at Site 192
in 'msaprobs'
muscle

The residue for every species at site 192 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 ---MAFSVVG A AWGIFTTGSS Site 149
E_caballus_3 ---MVFSALG A AYGTAKSGTG Site 149
C_globosum_3 ---IVFTCLG A SYGTAKSGVG Site 149
A_clavatus_3 ---IVFTCFG A AYGTAKAGVG Site 149
N_crassa_11 ---MIFGSAG A AYGTAKSGIG Site 149
N_crassa_16 ---IGLSVVG A AWGIFITGSS Site 149
X_tropicalis_16 ---ISLSVVG A AWGIYITGSS Site 149
P_anserina_11 ---MIFGSMG A AYGTAKAGIG Site 149
P_vivax_16 ---LFLSIIG A AWGIFICGTS Site 149
P_anserina_16 ---IGLSVVG A AWGIFITGSS Site 149
H_sapiens_16 ---ISLSVVG A AWGIYITGSS Site 149
T_annulata_3 ---MVFSNLG A AYGTARSGVG Site 149
C_intestinalis_3 ---MVFSAIG A AYGTAKSGTG Site 149
L_elongisporus_11 ---MILSCAG A AIGTAKSGIG Site 149
A_gossypii_16 ---IGLSVVG A AWGIFITGAS Site 149
A_pisum_16 ---VALSVVG A ALGIHTTGVS Site 149
N_crassa_3 ---IVFTCLG A SYGTAKSGVG Site 149
V_polyspora_3 ---IIFTSLG A AYGTAKSGVG Site 149
S_cerevisiae_3 ---IIFTSLG A AYGTAKSGVG Site 149
P_marneffei_16 ---IGLSVVG A AWGIFLTGSS Site 149
D_hansenii_3 ---IVFTCFG A SYGTAKSGVG Site 149
S_pombe_11 ---MVFSCLG A GYGTALAGRG Site 149
T_guttata_3 ---MVFSALG A AYGTAKSGTG Site 149
S_pombe_16 ---VAFGIIG A AWGIFICGTS Site 149
B_fuckeliana_3 ---IVFTCFG A AYGTAKSGVG Site 149
Species Residue at Site 192
in 'msaprobs'
muscle

The residue for every species at site 192 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 ---ISLSVVG A AWGIFATGSS Site 149
S_cerevisiae_16 ---VGLSVVG A AWGIFITGSS Site 149
R_norvegicus_3 ---MVFSAMG A AYGTAKSGTG Site 149
S_cerevisiae_11 ---MVLSCLG A AIGTAKSGIG Site 149
B_taurus_3 ---MVFSALG A AYGTAKSGTG Site 149
C_familiaris_3 ---MVFSALG A AYGTAKSGTG Site 149
P_anserina_3 ---IVFTCLG A SYGTAKSGVG Site 149
P_marneffei_11 ---MIFGSIG A AYGTAKSGIG Site 149
P_knowlesi_3 ---SIFSNLG A AYGTAKSGVG Site 149
T_guttata_16 ---ISLSVVG A AWGIYITGST Site 149
B_fuckeliana_11 ---MTFGCIG A AYGTAKSGIG Site 149
C_cinerea_okayama_3 ---IVFTCIG A SYGTAKSGVG Site 149
P_falciparum_16 ---LFLSIMG A AWGIFICGTS Site 149
N_vectensis_16 ---IALSVVG A AWGILLTGAS Site 149
A_niger_11 ---MIFGSMG A AYGTAKSGIG Site 149
A_niger_16 ---IGLSVVG A AWGIFLTGSS Site 149
C_parvum_3 ---LIFANLG A AYGIAKSGVG Site 149
S_purpuratus_16 ---ISLSVVG A AWGIFTTGTS Site 149
B_floridae_3 ---IVFSAFG A AYGTAKSGMG Site 149
Y_lipolytica_16 ---ITLSVIG A AWGIFITGST Site 149
A_mellifera_3 ---IIFSALG A AYGTAKSGTG Site 149
A_clavatus_16 ---IGLSVVG A GWGIFLTGSS Site 149
A_clavatus_11 ---MIFGSLG A AYGTAKSGIG Site 149
S_sclerotiorum_3 ---IVFTCFG A AYGTAKSGVG Site 149
P_falciparum_3 ---SIFSNLG A AFGTAKSGVG Site 149
Species Residue at Site 192
in 'msaprobs'
muscle

The residue for every species at site 192 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 ---LALSVVG S AWGIWVTASS Site 149
C_cinerea_okayama_11 ---MVFSTVG A AFGTSKAGIG Site 149
D_hansenii_16 ---IGFSVVG A AWGIFITGSS Site 149
D_hansenii_11 ---MILSCAG A AIGTAKSGIG Site 149
C_cinerea_okayama_16 ---IGLSVAG A ---------- Site 149
P_vivax_3 ---SIFSNLG A AYGTAKSGVG Site 149
C_immitis_3 ---IIFTCFG A AYGTAKAGVG Site 149
G_zeae_11 ---MIFGCIG A AYGTAKSGIG Site 149
C_neoformans_3 ---IVFTCIG A AYGTAKSGVG Site 149
H_sapiens_3 ---MVFSALG A AYGTAKSGTG Site 149
G_zeae_16 ---IGLSVVG A AWGIFITGSS Site 149
Y_lipolytica_11 ---MVLSSAG A AIGTAKSGIG Site 149
M_brevicollis_3 ---MVFSALG A AYGTAKSGTG Site 149
D_discoideum_3 ---LVFTVMG A AYGTAKASVG Site 149
P_stipitis_16 ---IGFSVVG A AWGIFITGST Site 149
C_albicans_16 ---IGFSVVG A AWGIFITGTS Site 149
C_albicans_11 ---MILSCAG A AIGTAKSGIG Site 149
P_stipitis_11 ---MVLSCAG A AIGTAKSGVG Site 149
X_laevis_3 ---MVFSALG A AYGTAKSGTG Site 149
C_glabrata_11 ---MILSCLG A AIGTAKSGIG Site 149
E_caballus_16 ---ISLSVVG A AWGIYITGSS Site 149
C_glabrata_16 ---IGLSVVG A AWGIFITGSS Site 149
V_polyspora_11 ---MILSCLG A AIGTAKSGIG Site 149
V_polyspora_16 ---IGLSVIG A AWGIFITGSS Site 149
C_hominis_16 ---IVLSTFG A GWGIFTTGNS Site 149
Species Residue at Site 192
in 'msaprobs'
muscle

The residue for every species at site 192 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 ---MIFGCAG A AYGTAKSGIG Site 149
C_globosum_16 ---IGLSVVG A AWGIFITGSS Site 149
O_mordax_16 ---ISLSVVG A AWGIYITGSS Site 149
D_rerio_16 ---ISLSVVG A AWGIYITGSS Site 149
B_bovis_3 ---MVFSSLG A AYGTARSGVG Site 149
B_floridae_16 ---ISLSVVG A AWGILTTGSS Site 149
M_musculus_3 ---MVFSAMG A AYGTAKSGTG Site 149
A_fumigatus_16 ---IGLSVVG A AWGIFLTGSS Site 149
C_familiaris_16 ---ISLSVVG A AWGIYITGSS Site 149
K_lactis_11 ---MILSCLG A AIGTAKSGIG Site 149
K_lactis_16 ---IGLSVVG A AWGIFITGSS Site 149
B_taurus_16 ---ISLSVVG A AWGIYITGSS Site 149
S_sclerotiorum_16 ---IGLSVVG A AWGILITGSS Site 149
S_sclerotiorum_11 ----MLQGIG A AYGTAKSGIG Site 149
R_norvegicus_16 ---ISLSVVG A AWGIYITGSS Site 149

Generated by PhyloBot at 16:02, October 27th 2020
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