V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 188 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 188 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 188 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 188 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 188
in 'msaprobs'
muscle

The residue for every species at site 188 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 -------ISL S VVGAAWGIYI Site 133
O_mordax_3 -------MVF S ALGAAYGTAK Site 133
D_rerio_3 -------MVF S ALGAAYGTAK Site 133
M_grisea_16 -------IGL S VVGAAWGIFI Site 133
M_grisea_11 -------MIF G CAGAAFGTAK Site 133
A_niger_3 -------IVF T CFGAAYGTAK Site 133
C_glabrata_3 -------IIF T SLGAAYGTAK Site 133
A_terreus_11 LTGGRKLTTT P AMGAAYGTAK Site 145
A_terreus_16 -------IGF S VVGAGWGIFL Site 133
C_parvum_16 -------IVL S TFGAGWGIFT Site 133
T_adhaerens_3 -------MVF S ALGAAYGTAK Site 133
T_castaneum_3 -------IIF S SLGAAYGTAK Site 133
X_tropicalis_3 -------MVF S ALGAAYGTAK Site 133
G_zeae_3 -------IVF T CLGASYGTAK Site 133
L_elongisporus_3 -------IVF T CFGASYGTAK Site 133
A_fumigatus_3 -------IVF T CFGAAYGTAK Site 133
M_grisea_3 -------IVF T CLGASYGTAK Site 133
S_pombe_3 -------IVF A SFGAAYGTAK Site 133
C_albicans_3 -------MIL S CAGAAIGTAK Site 133
B_bovis_16 -------LGL A VLGAGWGILL Site 133
C_muris_3 -------VVF A NLGAAYGTAR Site 133
S_purpuratus_3 -------MVF S ALGAAYGTAK Site 133
C_immitis_16 -------VGL S VVGAAWGIFI Site 133
M_mulatta_16 -------ISL S VVGAAWGIYI Site 133
Y_lipolytica_3 -------IVF T CFGASYGTAK Site 133
Species Residue at Site 188
in 'msaprobs'
muscle

The residue for every species at site 188 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 ---------N K THKVCRGILI Site 133
C_immitis_11 -------YDN T ALGAAYGTAK Site 133
A_mellifera_16 -------VAL S VVGAALGIHT Site 133
A_gossypii_11 -------MIL S SLGAAIGTAK Site 133
T_annulata_16 -------LGL S VFGAATGLML Site 133
N_vectensis_3 -------MVF S ALGAAYGTAK Site 133
S_Salar_16 -------ISL S VVGAAWGIYI Site 133
L_elongisporus_16 -------IGF S VVGAAWGIFI Site 133
C_neoformans_16 -------IGL S VSGAAWGIFV Site 133
C_neoformans_11 -------IVF S TVGAAYGTSK Site 133
P_knowlesi_16 -------LFL S IIGAAWGIFV Site 133
A_terreus_3 -------IVF T CFGAAYGTAK Site 133
A_pisum_3 -------IIF S ALGAAYGTAK Site 133
S_Salar_3 -------MVF S ALGAAYGTAK Site 133
P_marneffei_3 -------IVF T CFGAAYGTAK Site 133
P_stipitis_3 -------IVF T CFGASYGTAK Site 133
A_fumigatus_11 -------LPL R SMGAAYGTAK Site 133
A_gossypii_3 -------IVF T SFGAAYGTAK Site 133
C_hominis_3 -------TAL S NFGAAYGTAK Site 133
C_muris_16 -------LIL S GLGAGWGIFT Site 133
X_laevis_16 -------ISL S VVGAAWGIYI Site 133
M_mulatta_3 -------MVC S APRAAYGTVK Site 133
M_brevicollis_16 -------ISI S VVGAAWGIFI Site 133
K_lactis_3 -------IIF T SFGAAYGTAK Site 133
T_castaneum_16 -------VAL S VVGAAAGIHT Site 133
Species Residue at Site 188
in 'msaprobs'
muscle

The residue for every species at site 188 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 -------MAF S VVGAAWGIFT Site 133
E_caballus_3 -------MVF S ALGAAYGTAK Site 133
C_globosum_3 -------IVF T CLGASYGTAK Site 133
A_clavatus_3 -------IVF T CFGAAYGTAK Site 133
N_crassa_11 -------MIF G SAGAAYGTAK Site 133
N_crassa_16 -------IGL S VVGAAWGIFI Site 133
X_tropicalis_16 -------ISL S VVGAAWGIYI Site 133
P_anserina_11 -------MIF G SMGAAYGTAK Site 133
P_vivax_16 -------LFL S IIGAAWGIFI Site 133
P_anserina_16 -------IGL S VVGAAWGIFI Site 133
H_sapiens_16 -------ISL S VVGAAWGIYI Site 133
T_annulata_3 -------MVF S NLGAAYGTAR Site 133
C_intestinalis_3 -------MVF S AIGAAYGTAK Site 133
L_elongisporus_11 -------MIL S CAGAAIGTAK Site 133
A_gossypii_16 -------IGL S VVGAAWGIFI Site 133
A_pisum_16 -------VAL S VVGAALGIHT Site 133
N_crassa_3 -------IVF T CLGASYGTAK Site 133
V_polyspora_3 -------IIF T SLGAAYGTAK Site 133
S_cerevisiae_3 -------IIF T SLGAAYGTAK Site 133
P_marneffei_16 -------IGL S VVGAAWGIFL Site 133
D_hansenii_3 -------IVF T CFGASYGTAK Site 133
S_pombe_11 -------MVF S CLGAGYGTAL Site 133
T_guttata_3 -------MVF S ALGAAYGTAK Site 133
S_pombe_16 -------VAF G IIGAAWGIFI Site 133
B_fuckeliana_3 -------IVF T CFGAAYGTAK Site 133
Species Residue at Site 188
in 'msaprobs'
muscle

The residue for every species at site 188 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 -------ISL S VVGAAWGIFA Site 133
S_cerevisiae_16 -------VGL S VVGAAWGIFI Site 133
R_norvegicus_3 -------MVF S AMGAAYGTAK Site 133
S_cerevisiae_11 -------MVL S CLGAAIGTAK Site 133
B_taurus_3 -------MVF S ALGAAYGTAK Site 133
C_familiaris_3 -------MVF S ALGAAYGTAK Site 133
P_anserina_3 -------IVF T CLGASYGTAK Site 133
P_marneffei_11 -------MIF G SIGAAYGTAK Site 133
P_knowlesi_3 -------SIF S NLGAAYGTAK Site 133
T_guttata_16 -------ISL S VVGAAWGIYI Site 133
B_fuckeliana_11 -------MTF G CIGAAYGTAK Site 133
C_cinerea_okayama_3 -------IVF T CIGASYGTAK Site 133
P_falciparum_16 -------LFL S IMGAAWGIFI Site 133
N_vectensis_16 -------IAL S VVGAAWGILL Site 133
A_niger_11 -------MIF G SMGAAYGTAK Site 133
A_niger_16 -------IGL S VVGAAWGIFL Site 133
C_parvum_3 -------LIF A NLGAAYGIAK Site 133
S_purpuratus_16 -------ISL S VVGAAWGIFT Site 133
B_floridae_3 -------IVF S AFGAAYGTAK Site 133
Y_lipolytica_16 -------ITL S VIGAAWGIFI Site 133
A_mellifera_3 -------IIF S ALGAAYGTAK Site 133
A_clavatus_16 -------IGL S VVGAGWGIFL Site 133
A_clavatus_11 -------MIF G SLGAAYGTAK Site 133
S_sclerotiorum_3 -------IVF T CFGAAYGTAK Site 133
P_falciparum_3 -------SIF S NLGAAFGTAK Site 133
Species Residue at Site 188
in 'msaprobs'
muscle

The residue for every species at site 188 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 -------LAL S VVGSAWGIWV Site 133
C_cinerea_okayama_11 -------MVF S TVGAAFGTSK Site 133
D_hansenii_16 -------IGF S VVGAAWGIFI Site 133
D_hansenii_11 -------MIL S CAGAAIGTAK Site 133
C_cinerea_okayama_16 -------IGL S VAGA------ Site 133
P_vivax_3 -------SIF S NLGAAYGTAK Site 133
C_immitis_3 -------IIF T CFGAAYGTAK Site 133
G_zeae_11 -------MIF G CIGAAYGTAK Site 133
C_neoformans_3 -------IVF T CIGAAYGTAK Site 133
H_sapiens_3 -------MVF S ALGAAYGTAK Site 133
G_zeae_16 -------IGL S VVGAAWGIFI Site 133
Y_lipolytica_11 -------MVL S SAGAAIGTAK Site 133
M_brevicollis_3 -------MVF S ALGAAYGTAK Site 133
D_discoideum_3 -------LVF T VMGAAYGTAK Site 133
P_stipitis_16 -------IGF S VVGAAWGIFI Site 133
C_albicans_16 -------IGF S VVGAAWGIFI Site 133
C_albicans_11 -------MIL S CAGAAIGTAK Site 133
P_stipitis_11 -------MVL S CAGAAIGTAK Site 133
X_laevis_3 -------MVF S ALGAAYGTAK Site 133
C_glabrata_11 -------MIL S CLGAAIGTAK Site 133
E_caballus_16 -------ISL S VVGAAWGIYI Site 133
C_glabrata_16 -------IGL S VVGAAWGIFI Site 133
V_polyspora_11 -------MIL S CLGAAIGTAK Site 133
V_polyspora_16 -------IGL S VIGAAWGIFI Site 133
C_hominis_16 -------IVL S TFGAGWGIFT Site 133
Species Residue at Site 188
in 'msaprobs'
muscle

The residue for every species at site 188 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 -------MIF G CAGAAYGTAK Site 133
C_globosum_16 -------IGL S VVGAAWGIFI Site 133
O_mordax_16 -------ISL S VVGAAWGIYI Site 133
D_rerio_16 -------ISL S VVGAAWGIYI Site 133
B_bovis_3 -------MVF S SLGAAYGTAR Site 133
B_floridae_16 -------ISL S VVGAAWGILT Site 133
M_musculus_3 -------MVF S AMGAAYGTAK Site 133
A_fumigatus_16 -------IGL S VVGAAWGIFL Site 133
C_familiaris_16 -------ISL S VVGAAWGIYI Site 133
K_lactis_11 -------MIL S CLGAAIGTAK Site 133
K_lactis_16 -------IGL S VVGAAWGIFI Site 133
B_taurus_16 -------ISL S VVGAAWGIYI Site 133
S_sclerotiorum_16 -------IGL S VVGAAWGILI Site 133
S_sclerotiorum_11 --------ML Q GIGAAYGTAK Site 104
R_norvegicus_16 -------ISL S VVGAAWGIYI Site 133

Generated by PhyloBot at 16:48, October 30th 2020
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