V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 187 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 187 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 187 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 187 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 187
in 'msaprobs'
muscle

The residue for every species at site 187 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 --------IS L SVVGAAWGIY Site 125
O_mordax_3 --------MV F SALGAAYGTA Site 125
D_rerio_3 --------MV F SALGAAYGTA Site 125
M_grisea_16 --------IG L SVVGAAWGIF Site 125
M_grisea_11 --------MI F GCAGAAFGTA Site 125
A_niger_3 --------IV F TCFGAAYGTA Site 125
C_glabrata_3 --------II F TSLGAAYGTA Site 125
A_terreus_11 ILTGGRKLTT T PAMGAAYGTA Site 144
A_terreus_16 --------IG F SVVGAGWGIF Site 125
C_parvum_16 --------IV L STFGAGWGIF Site 125
T_adhaerens_3 --------MV F SALGAAYGTA Site 125
T_castaneum_3 --------II F SSLGAAYGTA Site 125
X_tropicalis_3 --------MV F SALGAAYGTA Site 125
G_zeae_3 --------IV F TCLGASYGTA Site 125
L_elongisporus_3 --------IV F TCFGASYGTA Site 125
A_fumigatus_3 --------IV F TCFGAAYGTA Site 125
M_grisea_3 --------IV F TCLGASYGTA Site 125
S_pombe_3 --------IV F ASFGAAYGTA Site 125
C_albicans_3 --------MI L SCAGAAIGTA Site 125
B_bovis_16 --------LG L AVLGAGWGIL Site 125
C_muris_3 --------VV F ANLGAAYGTA Site 125
S_purpuratus_3 --------MV F SALGAAYGTA Site 125
C_immitis_16 --------VG L SVVGAAWGIF Site 125
M_mulatta_16 --------IS L SVVGAAWGIY Site 125
Y_lipolytica_3 --------IV F TCFGASYGTA Site 125
Species Residue at Site 187
in 'msaprobs'
muscle

The residue for every species at site 187 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 ---------- N KTHKVCRGIL Site 101
C_immitis_11 --------YD N TALGAAYGTA Site 132
A_mellifera_16 --------VA L SVVGAALGIH Site 125
A_gossypii_11 --------MI L SSLGAAIGTA Site 125
T_annulata_16 --------LG L SVFGAATGLM Site 125
N_vectensis_3 --------MV F SALGAAYGTA Site 125
S_Salar_16 --------IS L SVVGAAWGIY Site 125
L_elongisporus_16 --------IG F SVVGAAWGIF Site 125
C_neoformans_16 --------IG L SVSGAAWGIF Site 125
C_neoformans_11 --------IV F STVGAAYGTS Site 125
P_knowlesi_16 --------LF L SIIGAAWGIF Site 125
A_terreus_3 --------IV F TCFGAAYGTA Site 125
A_pisum_3 --------II F SALGAAYGTA Site 125
S_Salar_3 --------MV F SALGAAYGTA Site 125
P_marneffei_3 --------IV F TCFGAAYGTA Site 125
P_stipitis_3 --------IV F TCFGASYGTA Site 125
A_fumigatus_11 --------LP L RSMGAAYGTA Site 125
A_gossypii_3 --------IV F TSFGAAYGTA Site 125
C_hominis_3 --------TA L SNFGAAYGTA Site 125
C_muris_16 --------LI L SGLGAGWGIF Site 125
X_laevis_16 --------IS L SVVGAAWGIY Site 125
M_mulatta_3 --------MV C SAPRAAYGTV Site 125
M_brevicollis_16 --------IS I SVVGAAWGIF Site 125
K_lactis_3 --------II F TSFGAAYGTA Site 125
T_castaneum_16 --------VA L SVVGAAAGIH Site 125
Species Residue at Site 187
in 'msaprobs'
muscle

The residue for every species at site 187 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 --------MA F SVVGAAWGIF Site 125
E_caballus_3 --------MV F SALGAAYGTA Site 125
C_globosum_3 --------IV F TCLGASYGTA Site 125
A_clavatus_3 --------IV F TCFGAAYGTA Site 125
N_crassa_11 --------MI F GSAGAAYGTA Site 125
N_crassa_16 --------IG L SVVGAAWGIF Site 125
X_tropicalis_16 --------IS L SVVGAAWGIY Site 125
P_anserina_11 --------MI F GSMGAAYGTA Site 125
P_vivax_16 --------LF L SIIGAAWGIF Site 125
P_anserina_16 --------IG L SVVGAAWGIF Site 125
H_sapiens_16 --------IS L SVVGAAWGIY Site 125
T_annulata_3 --------MV F SNLGAAYGTA Site 125
C_intestinalis_3 --------MV F SAIGAAYGTA Site 125
L_elongisporus_11 --------MI L SCAGAAIGTA Site 125
A_gossypii_16 --------IG L SVVGAAWGIF Site 125
A_pisum_16 --------VA L SVVGAALGIH Site 125
N_crassa_3 --------IV F TCLGASYGTA Site 125
V_polyspora_3 --------II F TSLGAAYGTA Site 125
S_cerevisiae_3 --------II F TSLGAAYGTA Site 125
P_marneffei_16 --------IG L SVVGAAWGIF Site 125
D_hansenii_3 --------IV F TCFGASYGTA Site 125
S_pombe_11 --------MV F SCLGAGYGTA Site 125
T_guttata_3 --------MV F SALGAAYGTA Site 125
S_pombe_16 --------VA F GIIGAAWGIF Site 125
B_fuckeliana_3 --------IV F TCFGAAYGTA Site 125
Species Residue at Site 187
in 'msaprobs'
muscle

The residue for every species at site 187 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 --------IS L SVVGAAWGIF Site 125
S_cerevisiae_16 --------VG L SVVGAAWGIF Site 125
R_norvegicus_3 --------MV F SAMGAAYGTA Site 125
S_cerevisiae_11 --------MV L SCLGAAIGTA Site 125
B_taurus_3 --------MV F SALGAAYGTA Site 125
C_familiaris_3 --------MV F SALGAAYGTA Site 125
P_anserina_3 --------IV F TCLGASYGTA Site 125
P_marneffei_11 --------MI F GSIGAAYGTA Site 125
P_knowlesi_3 --------SI F SNLGAAYGTA Site 125
T_guttata_16 --------IS L SVVGAAWGIY Site 125
B_fuckeliana_11 --------MT F GCIGAAYGTA Site 125
C_cinerea_okayama_3 --------IV F TCIGASYGTA Site 125
P_falciparum_16 --------LF L SIMGAAWGIF Site 125
N_vectensis_16 --------IA L SVVGAAWGIL Site 125
A_niger_11 --------MI F GSMGAAYGTA Site 125
A_niger_16 --------IG L SVVGAAWGIF Site 125
C_parvum_3 --------LI F ANLGAAYGIA Site 125
S_purpuratus_16 --------IS L SVVGAAWGIF Site 125
B_floridae_3 --------IV F SAFGAAYGTA Site 125
Y_lipolytica_16 --------IT L SVIGAAWGIF Site 125
A_mellifera_3 --------II F SALGAAYGTA Site 125
A_clavatus_16 --------IG L SVVGAGWGIF Site 125
A_clavatus_11 --------MI F GSLGAAYGTA Site 125
S_sclerotiorum_3 --------IV F TCFGAAYGTA Site 125
P_falciparum_3 --------SI F SNLGAAFGTA Site 125
Species Residue at Site 187
in 'msaprobs'
muscle

The residue for every species at site 187 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 --------LA L SVVGSAWGIW Site 125
C_cinerea_okayama_11 --------MV F STVGAAFGTS Site 125
D_hansenii_16 --------IG F SVVGAAWGIF Site 125
D_hansenii_11 --------MI L SCAGAAIGTA Site 125
C_cinerea_okayama_16 --------IG L SVAGA----- Site 125
P_vivax_3 --------SI F SNLGAAYGTA Site 125
C_immitis_3 --------II F TCFGAAYGTA Site 125
G_zeae_11 --------MI F GCIGAAYGTA Site 125
C_neoformans_3 --------IV F TCIGAAYGTA Site 125
H_sapiens_3 --------MV F SALGAAYGTA Site 125
G_zeae_16 --------IG L SVVGAAWGIF Site 125
Y_lipolytica_11 --------MV L SSAGAAIGTA Site 125
M_brevicollis_3 --------MV F SALGAAYGTA Site 125
D_discoideum_3 --------LV F TVMGAAYGTA Site 125
P_stipitis_16 --------IG F SVVGAAWGIF Site 125
C_albicans_16 --------IG F SVVGAAWGIF Site 125
C_albicans_11 --------MI L SCAGAAIGTA Site 125
P_stipitis_11 --------MV L SCAGAAIGTA Site 125
X_laevis_3 --------MV F SALGAAYGTA Site 125
C_glabrata_11 --------MI L SCLGAAIGTA Site 125
E_caballus_16 --------IS L SVVGAAWGIY Site 125
C_glabrata_16 --------IG L SVVGAAWGIF Site 125
V_polyspora_11 --------MI L SCLGAAIGTA Site 125
V_polyspora_16 --------IG L SVIGAAWGIF Site 125
C_hominis_16 --------IV L STFGAGWGIF Site 125
Species Residue at Site 187
in 'msaprobs'
muscle

The residue for every species at site 187 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 --------MI F GCAGAAYGTA Site 125
C_globosum_16 --------IG L SVVGAAWGIF Site 125
O_mordax_16 --------IS L SVVGAAWGIY Site 125
D_rerio_16 --------IS L SVVGAAWGIY Site 125
B_bovis_3 --------MV F SSLGAAYGTA Site 125
B_floridae_16 --------IS L SVVGAAWGIL Site 125
M_musculus_3 --------MV F SAMGAAYGTA Site 125
A_fumigatus_16 --------IG L SVVGAAWGIF Site 125
C_familiaris_16 --------IS L SVVGAAWGIY Site 125
K_lactis_11 --------MI L SCLGAAIGTA Site 125
K_lactis_16 --------IG L SVVGAAWGIF Site 125
B_taurus_16 --------IS L SVVGAAWGIY Site 125
S_sclerotiorum_16 --------IG L SVVGAAWGIL Site 125
S_sclerotiorum_11 ---------M L QGIGAAYGTA Site 103
R_norvegicus_16 --------IS L SVVGAAWGIY Site 125

Generated by PhyloBot at 17:22, October 30th 2020
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