V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 171 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 171 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 171 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 171 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 171
in 'msaprobs'
muscle

The residue for every species at site 171 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 --------IG L A--------- Site 104
O_mordax_3 --------AS A A--------- Site 104
D_rerio_3 --------AS S A--------- Site 104
M_grisea_16 --------IA L C--------- Site 104
M_grisea_11 --------IA A A--------- Site 104
A_niger_3 --------CT S A--------- Site 104
C_glabrata_3 --------CA A A--------- Site 104
A_terreus_11 --------CT Y FFVLQILTGG Site 104
A_terreus_16 --------IA M C--------- Site 104
C_parvum_16 --------VV L C--------- Site 104
T_adhaerens_3 --------AT A A--------- Site 104
T_castaneum_3 --------AA A A--------- Site 104
X_tropicalis_3 --------AS S A--------- Site 104
G_zeae_3 --------CT C A--------- Site 104
L_elongisporus_3 --------CA A A--------- Site 104
A_fumigatus_3 --------CT S A--------- Site 104
M_grisea_3 --------CT A A--------- Site 104
S_pombe_3 --------CT A A--------- Site 104
C_albicans_3 --------CA A A--------- Site 104
B_bovis_16 --------TF L A--------- Site 104
C_muris_3 --------IA G C--------- Site 104
S_purpuratus_3 --------AT S A--------- Site 104
C_immitis_16 --------IG L C--------- Site 104
M_mulatta_16 --------IG L A--------- Site 104
Y_lipolytica_3 --------CT A A--------- Site 104
Species Residue at Site 171
in 'msaprobs'
muscle

The residue for every species at site 171 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 ---------- - ----------  
C_immitis_11 PTAWSHVFCS H G--------- Site 128
A_mellifera_16 --------IG L A--------- Site 104
A_gossypii_11 --------CA A A--------- Site 104
T_annulata_16 --------IF F S--------- Site 104
N_vectensis_3 --------AT A A--------- Site 104
S_Salar_16 --------IG L A--------- Site 104
L_elongisporus_16 --------IA S C--------- Site 104
C_neoformans_16 --------VG L C--------- Site 104
C_neoformans_11 --------VT S A--------- Site 104
P_knowlesi_16 --------IA M A--------- Site 104
A_terreus_3 --------CT S A--------- Site 104
A_pisum_3 --------AA S A--------- Site 104
S_Salar_3 --------AS A A--------- Site 104
P_marneffei_3 --------CT S A--------- Site 104
P_stipitis_3 --------CA A S--------- Site 104
A_fumigatus_11 ---------L R I--------- Site 104
A_gossypii_3 --------CA A A--------- Site 104
C_hominis_3 --------ST L A--------- Site 104
C_muris_16 --------VA M C--------- Site 104
X_laevis_16 --------IG L A--------- Site 104
M_mulatta_3 --------AS A A--------- Site 104
M_brevicollis_16 --------IA I S--------- Site 104
K_lactis_3 --------CA A A--------- Site 104
T_castaneum_16 --------IG L A--------- Site 104
Species Residue at Site 171
in 'msaprobs'
muscle

The residue for every species at site 171 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 --------IG L A--------- Site 104
E_caballus_3 --------AS A A--------- Site 104
C_globosum_3 --------CT A A--------- Site 104
A_clavatus_3 --------CT S A--------- Site 104
N_crassa_11 --------IA A A--------- Site 104
N_crassa_16 --------IA L C--------- Site 104
X_tropicalis_16 --------IG L S--------- Site 104
P_anserina_11 --------IA A A--------- Site 104
P_vivax_16 --------IA M A--------- Site 104
P_anserina_16 --------IA L C--------- Site 104
H_sapiens_16 --------IG L A--------- Site 104
T_annulata_3 --------VV C A--------- Site 104
C_intestinalis_3 --------AA S A--------- Site 104
L_elongisporus_11 --------CA A A--------- Site 104
A_gossypii_16 --------IS L C--------- Site 104
A_pisum_16 --------IS L A--------- Site 104
N_crassa_3 --------CT A A--------- Site 104
V_polyspora_3 --------CA A S--------- Site 104
S_cerevisiae_3 --------CA S A--------- Site 104
P_marneffei_16 --------IA M C--------- Site 104
D_hansenii_3 --------CA A A--------- Site 104
S_pombe_11 --------VC A S--------- Site 104
T_guttata_3 --------AS A A--------- Site 104
S_pombe_16 --------IA S C--------- Site 104
B_fuckeliana_3 --------CT S A--------- Site 104
Species Residue at Site 171
in 'msaprobs'
muscle

The residue for every species at site 171 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 --------IG L A--------- Site 104
S_cerevisiae_16 --------IA L C--------- Site 104
R_norvegicus_3 --------AS S A--------- Site 104
S_cerevisiae_11 --------CA A A--------- Site 104
B_taurus_3 --------AS A A--------- Site 104
C_familiaris_3 --------AS A A--------- Site 104
P_anserina_3 --------CT A A--------- Site 104
P_marneffei_11 --------VA A A--------- Site 104
P_knowlesi_3 --------IA A S--------- Site 104
T_guttata_16 --------IG L A--------- Site 104
B_fuckeliana_11 --------IA F A--------- Site 104
C_cinerea_okayama_3 --------CT A A--------- Site 104
P_falciparum_16 --------IA L S--------- Site 104
N_vectensis_16 --------IA I A--------- Site 104
A_niger_11 --------IA A A--------- Site 104
A_niger_16 --------IA M C--------- Site 104
C_parvum_3 --------IA G C--------- Site 104
S_purpuratus_16 --------VG L S--------- Site 104
B_floridae_3 --------AT S A--------- Site 104
Y_lipolytica_16 --------IG M C--------- Site 104
A_mellifera_3 --------AA S A--------- Site 104
A_clavatus_16 --------IA M C--------- Site 104
A_clavatus_11 --------IA S A--------- Site 104
S_sclerotiorum_3 --------CT A A--------- Site 104
P_falciparum_3 --------IA A S--------- Site 104
Species Residue at Site 171
in 'msaprobs'
muscle

The residue for every species at site 171 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 --------IG L S--------- Site 104
C_cinerea_okayama_11 ---------- - ----------  
D_hansenii_16 --------IA S C--------- Site 104
D_hansenii_11 --------CA A A--------- Site 104
C_cinerea_okayama_16 --------IG L C--------- Site 104
P_vivax_3 --------IA A S--------- Site 104
C_immitis_3 --------CS S A--------- Site 104
G_zeae_11 --------IA A A--------- Site 104
C_neoformans_3 --------CT S A--------- Site 104
H_sapiens_3 --------AS A A--------- Site 104
G_zeae_16 --------IA F C--------- Site 104
Y_lipolytica_11 --------CC A A--------- Site 104
M_brevicollis_3 --------AS A A--------- Site 104
D_discoideum_3 --------VT A A--------- Site 104
P_stipitis_16 --------IA S C--------- Site 104
C_albicans_16 --------IG S C--------- Site 104
C_albicans_11 --------CA A A--------- Site 104
P_stipitis_11 --------CA A A--------- Site 104
X_laevis_3 --------AS S A--------- Site 104
C_glabrata_11 --------CA L A--------- Site 104
E_caballus_16 --------IG L A--------- Site 104
C_glabrata_16 --------IA S C--------- Site 104
V_polyspora_11 --------CA F A--------- Site 104
V_polyspora_16 --------IS L C--------- Site 104
C_hominis_16 --------VV L C--------- Site 104
Species Residue at Site 171
in 'msaprobs'
muscle

The residue for every species at site 171 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 --------IA A A--------- Site 104
C_globosum_16 --------IA L C--------- Site 104
O_mordax_16 --------IG L A--------- Site 104
D_rerio_16 --------IG L A--------- Site 104
B_bovis_3 --------AV S S--------- Site 104
B_floridae_16 --------VG L T--------- Site 104
M_musculus_3 --------AS S A--------- Site 104
A_fumigatus_16 --------IA L C--------- Site 104
C_familiaris_16 --------IG L A--------- Site 104
K_lactis_11 --------CA F A--------- Site 104
K_lactis_16 --------IA L C--------- Site 104
B_taurus_16 --------IG L A--------- Site 104
S_sclerotiorum_16 --------IG M C--------- Site 104
S_sclerotiorum_11 ---------- - ----------  
R_norvegicus_16 --------IG L A--------- Site 104

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