V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 15 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 15 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 15 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 15 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 15
in 'msaprobs'
muscle

The residue for every species at site 15 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 ---T------ G ---------- Site 47
O_mordax_3 ---S------ - ----------  
D_rerio_3 ---D------ - ----------  
M_grisea_16 ---S------ L ---------- Site 52
M_grisea_11 ---PGVVPD- D ---------- Site 67
A_niger_3 ---A------ T ---------- Site 68
C_glabrata_3 ---S------ - ----------  
A_terreus_11 ---A------ D ---------- Site 67
A_terreus_16 ---G------ L ---------- Site 52
C_parvum_16 ---A------ Y ---------- Site 66
T_adhaerens_3 ---T------ D ---------- Site 67
T_castaneum_3 ---S------ G ---------- Site 67
X_tropicalis_3 ---S------ T ---------- Site 66
G_zeae_3 ---V------ S ---------- Site 68
L_elongisporus_3 ---S------ - ----------  
A_fumigatus_3 ---A------ T ---------- Site 68
M_grisea_3 ---P------ S ---------- Site 68
S_pombe_3 ---S------ T ---------- Site 68
C_albicans_3 ---S------ E ---------- Site 64
B_bovis_16 ---A------ K ---------- Site 79
C_muris_3 ---I------ T ---------- Site 79
S_purpuratus_3 ---A------ E ---------- Site 79
C_immitis_16 ---G------ L ---------- Site 52
M_mulatta_16 ---T------ G ---------- Site 47
Y_lipolytica_3 ---AL---TA T ---------- Site 68
Species Residue at Site 15
in 'msaprobs'
muscle

The residue for every species at site 15 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 ---S------ L ---------- Site 52
C_immitis_11 ---A------ E ---------- Site 67
A_mellifera_16 ---R------ Y ---------- Site 49
A_gossypii_11 ---T------ D ---------- Site 64
T_annulata_16 ---Y------ L ---------- Site 79
N_vectensis_3 ---S------ D ---------- Site 77
S_Salar_16 ---N------ G ---------- Site 47
L_elongisporus_16 ---S------ Y ---------- Site 53
C_neoformans_16 ---A------ F ---------- Site 51
C_neoformans_11 ---P------ P ---------- Site 82
P_knowlesi_16 ---Y------ N ---------- Site 67
A_terreus_3 ---A------ T ---------- Site 66
A_pisum_3 ---S------ T ---------- Site 66
S_Salar_3 ---S------ - ----------  
P_marneffei_3 ---A------ T ---------- Site 68
P_stipitis_3 ---S------ - ----------  
A_fumigatus_11 ---A------ E ---------- Site 67
A_gossypii_3 ---S------ - ----------  
C_hominis_3 ---A------ P ---------- Site 81
C_muris_16 ---P------ Q ---------- Site 65
X_laevis_16 ---N------ G ---------- Site 47
M_mulatta_3 ---S------ E ---------- Site 67
M_brevicollis_16 ---A------ P ---------- Site 43
K_lactis_3 ---S------ - ----------  
T_castaneum_16 ---R------ A ---------- Site 49
Species Residue at Site 15
in 'msaprobs'
muscle

The residue for every species at site 15 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 ---Y------ K ---------- Site 49
E_caballus_3 ---S------ E ---------- Site 67
C_globosum_3 ---------- - ----------  
A_clavatus_3 ---A------ T ---------- Site 68
N_crassa_11 ---AEI-MA- D ---------- Site 67
N_crassa_16 ---S------ L ---------- Site 52
X_tropicalis_16 ---N------ G ---------- Site 47
P_anserina_11 ---A------ D ---------- Site 67
P_vivax_16 ---Y------ N ---------- Site 67
P_anserina_16 ---S------ L ---------- Site 52
H_sapiens_16 ---T------ G ---------- Site 47
T_annulata_3 ---A------ V ---------- Site 78
C_intestinalis_3 ---S------ - ----------  
L_elongisporus_11 ---S------ D ---------- Site 64
A_gossypii_16 ---S------ S ---------- Site 39
A_pisum_16 ---R------ L ---------- Site 47
N_crassa_3 ---S------ - ----------  
V_polyspora_3 ---S------ T ---------- Site 68
S_cerevisiae_3 ---T------ - ----------  
P_marneffei_16 ---A------ L ---------- Site 53
D_hansenii_3 ---S------ - ----------  
S_pombe_11 ---S------ S ---------- Site 68
T_guttata_3 ---S------ S ---------- Site 66
S_pombe_16 ---S------ L ---------- Site 51
B_fuckeliana_3 ---------- - ----------  
Species Residue at Site 15
in 'msaprobs'
muscle

The residue for every species at site 15 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 ---S------ T ---------- Site 53
S_cerevisiae_16 ---N------ K ---------- Site 37
R_norvegicus_3 ---A------ D ---------- Site 67
S_cerevisiae_11 ---S------ T ---------- Site 63
B_taurus_3 ---S------ E ---------- Site 67
C_familiaris_3 ---S------ E ---------- Site 67
P_anserina_3 ---S------ - ----------  
P_marneffei_11 ---A------ D ---------- Site 67
P_knowlesi_3 ---R------ P ---------- Site 79
T_guttata_16 ---T------ G ---------- Site 47
B_fuckeliana_11 ---A------ E ---------- Site 67
C_cinerea_okayama_3 ---S------ S ---------- Site 68
P_falciparum_16 ---Y------ N ---------- Site 67
N_vectensis_16 ---A------ Y ---------- Site 43
A_niger_11 ---A------ D ---------- Site 67
A_niger_16 ---G------ L ---------- Site 52
C_parvum_3 ---I------ T ---------- Site 79
S_purpuratus_16 ---G------ Y ---------- Site 48
B_floridae_3 ---S------ S ---------- Site 76
Y_lipolytica_16 ---A------ T ---------- Site 52
A_mellifera_3 ---S------ D ---------- Site 68
A_clavatus_16 ---V------ L ---------- Site 52
A_clavatus_11 ---A------ E ---------- Site 67
S_sclerotiorum_3 ---T------ - ----------  
P_falciparum_3 ---R------ Q ---------- Site 79
Species Residue at Site 15
in 'msaprobs'
muscle

The residue for every species at site 15 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 ---P------ D ---------- Site 65
C_cinerea_okayama_11 ---------- - ----------  
D_hansenii_16 ---------- - ----------  
D_hansenii_11 ---S------ D ---------- Site 64
C_cinerea_okayama_16 ---G------ L ---------- Site 50
P_vivax_3 ---R------ P ---------- Site 79
C_immitis_3 ---P------ S ---------- Site 68
G_zeae_11 ---A------ E ---------- Site 67
C_neoformans_3 ---S------ T ---------- Site 66
H_sapiens_3 ---S------ E ---------- Site 67
G_zeae_16 ---S------ L ---------- Site 52
Y_lipolytica_11 ---S------ E ---------- Site 66
M_brevicollis_3 ---------- - ----------  
D_discoideum_3 ---F------ Q ---------- Site 59
P_stipitis_16 ---A------ Y ---------- Site 54
C_albicans_16 ---S------ V ---------- Site 54
C_albicans_11 ---S------ E ---------- Site 64
P_stipitis_11 ---S------ G ---------- Site 64
X_laevis_3 ---S------ V ---------- Site 66
C_glabrata_11 ---D------ M ---------- Site 63
E_caballus_16 ---T------ G ---------- Site 47
C_glabrata_16 ---A------ V ---------- Site 39
V_polyspora_11 ---S------ E ---------- Site 66
V_polyspora_16 ---S------ A ---------- Site 36
C_hominis_16 ---V------ Y ---------- Site 66
Species Residue at Site 15
in 'msaprobs'
muscle

The residue for every species at site 15 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 ---A------ E ---------- Site 67
C_globosum_16 ---G------ Y ---------- Site 50
O_mordax_16 CMMN------ G ---------- Site 47
D_rerio_16 ---N------ G ---------- Site 47
B_bovis_3 ---A------ A ---------- Site 66
B_floridae_16 ---S------ L ---------- Site 49
M_musculus_3 ---A------ D ---------- Site 67
A_fumigatus_16 ---V------ L ---------- Site 52
C_familiaris_16 ---T------ G ---------- Site 47
K_lactis_11 ---S------ Q ---------- Site 63
K_lactis_16 ---R------ P LEAERFLGCR Site 3
B_taurus_16 ---T------ G ---------- Site 47
S_sclerotiorum_16 ---S------ L ---------- Site 52
S_sclerotiorum_11 ---A------ E ---------- Site 67
R_norvegicus_16 ---T------ G ---------- Site 47

Generated by PhyloBot at 15:13, October 27th 2020
Questions/Comments? help@phylobot.com